tidesurf.transcript.GTFLine

class tidesurf.transcript.GTFLine(chromosome: str, source: str, feature: str, start: int, end: int, score: str, strand: Strand, frame: str, attributes: Dict[str, str])

Bases: object

A line from a GTF file, corresponding to particular genomic feature.

Parameters:

chromosome str

Chromosome of the feature.

source str

Source of the feature.

feature str

Type of feature.

start int

Genomic start position of feature (0-based).

end int

Genomic end position of feature (0-based).

score str

Feature score.

strand Strand

Strand of the feature.

frame str

Frame of the feature.

attributes Dict[str, str]

Additional attributes of the feature.

Attributes

attributes	Additional attributes of the feature.
chromosome	Chromosome of the feature.
end	Genomic end position of the feature (0-based).
feature	Type of feature.
frame	Frame of the feature.
score	Feature score.
source	Source of the feature.
start	Genomic start position of the feature (0-based).
strand	Strand of the feature.