tidesurf.transcript

Module for working with genomic features and GTF files.

Classes

Exon(gene_id, gene_name, transcript_id, ...)	An exon of a transcript.
GTFLine(chromosome, source, feature, start, ...)	A line from a GTF file, corresponding to particular genomic feature.
GenomicFeature(gene_id, gene_name, ...)	A genomic feature on a particular strand on a chromosome.
Intron(gene_id, gene_name, transcript_id, ...)	An intron of a transcript.
Transcript(gene_id, gene_name, ...[, regions])	A transcript.
TranscriptIndex(gtf_file)	An index of transcripts from a GTF file.